PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G235900.1
Common NameB456_011G235900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 235aa    MW: 25433.1 Da    PI: 4.8781
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G235900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1971121155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr p+   k kr +lg+f ta eAa a+++a+k+++g
  Gorai.011G235900.1  71 CNYRGVRQRT-WGKWVAEIRAPN---KGKRLWLGTFPTAVEAASAYDEAAKAMYG 121
                         56*****999.**********93...25************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-2971129No hitNo description
PfamPF008471.7E-1371121IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2072129IPR016177DNA-binding domain
SMARTSM003802.0E-3572135IPR001471AP2/ERF domain
PROSITE profilePS5103221.66772129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3072130IPR001471AP2/ERF domain
PRINTSPR003676.5E-107384IPR001471AP2/ERF domain
PRINTSPR003676.5E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGFKDNHNPE MDSSLFPGSS RKRKRRDGLS VADTLKLWSE NSEAKQSRKA PAKGSKKGCM  60
KGKGGPQNQN CNYRGVRQRT WGKWVAEIRA PNKGKRLWLG TFPTAVEAAS AYDEAAKAMY  120
GDKAILNMPQ GSDSDSVATP SHGFSQATTT TTATCGGSES AMDGPVDSEA PSTSGAMDMK  180
GEGGEVDRRG DDTDYSWLEG LESLQFFDDI PMDYVGNNSV WDNCELFDID EFLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-1772134568ATERF1
2gcc_A4e-1772134568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452966.11e-175PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotA2WL193e-49DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF73e-49DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D2TCP71e-175A0A0D2TCP7_G
STRINGSi002067m9e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-30DRE-binding protein 2A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]